Table of Contents, Volume 9, 2011


Moritz Holtappels, Marcel M.M. Kuypers, Michael Schlüter and Volker Brüchert
Measurement and interpretation of solute concentration gradients in the benthic boundary layer
2011, 9:1-13
Abstract | PDF (Open Access)

Jordan S. Read, Ashley Shade, Chin H. Wu, Alex Gorzalski, and K. D. McMahon
"Gradual Entrainment Lake Inverter" (GELI): A novel device for experimental lake mixing
2011, 9:14-28
Abstract | PDF (Open Access)

Moritz Holtappels and Andreas Lorke
Estimating turbulent diffusion in a benthic boundary layer
2011, 9:29-41
Abstract | PDF (Open Access)


Yama Tomonaga, Matthias S. Brennwald, and Rolf Kipfer
An improved method for the analysis of dissolved noble gases in the porewater of unconsolidated sediments
2011, 9:42-49
Abstract | PDF (Open Access)

Lachlan I.W. McKinna, Miles J. Furnas and Peter V. Ridd
A simple, binary classification algorithm for the detection of Trichodesmium spp. within the Great Barrier Reef using MODIS imagery
2011, 9:50-66
Abstract | PDF (Open Access)

Claudia Dziallas, Solvig Pinnow, and Hans-Peter Grossart
Quantification of toxic and toxin-producing cyanobacterial cells by RING-FISH in combination with flow cytometry
2011, 9:67-73
Abstract | PDF (Open Access)

D.C. Pierson, G. A. Weyhenmeyer, L. Arvola, B. Benson, T. Blenckner, T. Kratz, D.M. Livingstone, H. Markensten, G. Marzec, K. Pettersson, and K. Weathers
An automated method to monitor lake ice phenology
2011, 9:74-83
Abstract | PDF (Open Access)


G. Y. Matsui, N. Volkenborn, L. Polerecky, U. Henne, D. S. Wethey, C. R. Lovell, and S. A. Woodin
Mechanical imitation of bidirectional bioadvection in aquatic sediments
2011, 9:84-96
Abstract | PDF (Open Access)

Justin E. Campbell, James W. Fourqurean
Novel methodology for in situ carbon dioxide enrichment of benthic ecosystems
2011, 9:97-109
Abstract | PDF (Open Access)


Tobias Goldhammer, Thomas Max, Benjamin Brunner, Florian Einsiedl, Matthias Zabel
Marine sediment pore-water profiles of phosphate δ18O using a refined micro-extraction
2011, 9:110-120
Abstract | PDF (Open Access)

Katlin L. Bowman, Chad R. Hammerschmidt
Extraction of monomethylmercury from seawater for low-femtomolar determination
2011, 9:121-128
Abstract | PDF (Open Access)

Jason R. Graff, Tatiana A. Rynearson
Extraction method influences the recovery of phytoplankton pigments from natural assemblages
2011, 9:129-139
Abstract | PDF (Open Access)

L. A. Ziolkowski, A.R. Chamberlin, J. Greaves, E.R.M. Druffel
Quantification of black carbon in marine systems using the benzene polycarboxylic acid method: a mechanistic and yield study
2011, 9:140-140
Abstract | PDF (Open Access)

Jennifer R. Brum, Grieg F. Steward
Physical fractionation of aquatic viral assemblages
2011, 9:150-163
Abstract | PDF (Open Access) | Appendix

Ryan J. Bell, R. Timothy Short, Robert H. Byrne
In situ determination of total dissolved inorganic carbon by underwater membrane introduction mass spectrometry
2011, 9:164-175
Abstract | PDF (Open Access)


Wanda Gülzow, Gregor Rehder, Bernd Schneider, Jens Schneider v. Deimling, Bernd Sadkowiak
A new method for continuous measurement of methane and carbon dioxide in surface waters using off-axis integrated cavity output spectroscopy (ICOS): An example from the Baltic Sea
2011, 9:176-184
Abstract | PDF (Open Access)

Gaston E. Small, Rebecca J. Bixby, Caner Kazanci, Catherine M. Pringle
Partitioning stoichiometric components of epilithic biofilm using mixing models
2011, 9:185-193
Abstract | PDF (Open Access) | Appendix

Stephen C. Phillips, Joel E. Johnson, Eduardo Miranda, Corinne Disenhof
Improving CHN measurements in carbonate-rich marine sediments
2011, 9:194-203
Abstract | PDF (Open Access)

Jared D. Figurski, Dan Malone, Jessica R. Lacy, Mark Denny
An inexpensive instrument for measuring wave exposure and water velocity
2011, 9:204-214
Abstract | PDF (Open Access)

D.J. Akhurst, M.W. Clark, A. Reichelt-Brushett, G.B. Jones
Grain size normalization: a case for post extraction normalization and inclusion of selective extraction procedures
2011, 9:215-231
Abstract | PDF (Open Access)


L. Peperzak, K. R. Timmermans, M. R. Wernand, S. Oosterhuis, H. J. van der Woerd
A mesocosm tool to optically study phytoplankton dynamics
2011, 9:232-244
Abstract | PDF (Open Access)

Mary A. Pack, Monica B. Heintz, William S. Reeburgh, Susan E. Trumbore, David L. Valentine, Xiaomei Xu, Ellen R. M. Druffel
A method for measuring methane oxidation rates using low levels of 14C-labeled methane and accelerator mass spectrometry
2011, 9:245-260
Abstract | PDF (Open Access)

Frédéric Brabant, Saida El Amri, Jean-Louis Tison
A robust approach for the determination of dimethylsulfoxide in sea ice
2011, 9:261-274
Abstract | PDF (Open Access)

Tetsunori Inoue, Ronnie N. Glud, Henrik Stahl, Andrew Hume
Comparison of three different methods for assessing in situ friction velocity: A case study from Loch Etive, Scotland
2011, 9:275-287
Abstract | PDF (Open Access)


Jeff Shimeta, Perran L.M. Cook
Testing assumptions of the eukaryotic inhibitor method for investigating interactions between aquatic protozoa and bacteria, applied to marine sediment
2011, 9:288-295
Abstract | PDF (Open Access)

C.J. Watras, P.C. Hanson, T.L. Stacy, K.M. Morrison, J. Mather, Y.-H. Hu, P. Milewski
A temperature compensation method for CDOM fluorescence sensors in freshwater
2011, 9:296-301
Abstract | PDF (Open Access)

Cynthia E. Bluteau, Nicole L. Jones, Gregory N. Ivey
Estimating turbulent kinetic energy dissipation using the inertial subrange method in environmental flows
2011, 9:302-321
Abstract | PDF (Open Access)

Jean Guillard, Paul Fernandes, Thomas Laloë, Patrice Brehmer
Three-dimensional internal spatial structure of young-of-the-year pelagic freshwater fish provides evidence for the identification of fish school species
2011, 9:322-328
Abstract | PDF (Open Access)


Urania Christaki, Claude Courties, Ramon Massana, Philippe Catala, Philippe Lebaron, Josep M. Gasol, Mikhail V. Zubkov
Optimized routine flow cytometric enumeration of heterotrophic flagellates using SYBR Green I
2011, 9:329-339
Abstract | PDF (Open Access)

Daniel F. McGinnis, Sergiy Cherednichenko, Stefan Sommer, Peter Berg, Lorenzo Rovelli, Ralf Schwarz, Ronnie N. Glud, Peter Linke
Simple, robust eddy correlation amplifier for aquatic dissolved oxygen and hydrogen sulfide flux measurements
2011, 9:340-347
Abstract | PDF (Open Access) | Appendix (Open Access)


Morten Larsen, Sergey M. Borisov, Björn Grunwald, Ingo Klimant, Ronnie N. Glud
A simple and inexpensive high resolution color ratiometric planar optode imaging approach: application to oxygen and pH sensing
2011, 9:348-360
Abstract | PDF (Open Access)

François Gevaert, Gaspard Delebecq, Dominique Menu, Laurent Brutier
A fully automated system for measurements of photosynthetic oxygen exchange under immersed conditions: an example of its use in Laminaria digitata (Heterokontophyta: Phaeophyceae)
2011, 9:361-379
Abstract | PDF (Open Access)

Karen L. Knee, Ester Garcia-Solsona, Jordi Garcia-Orellana, Alexandria B. Boehm, Adina Paytan
Using radium isotopes to characterize water ages and coastal mixing rates: A sensitivity analysis
2011, 9:380-395
Abstract | PDF (Open Access)

Arnold G. Dekker, Stuart R. Phinn, Janet Anstee, Paul Bissett, Vittorio E. Brando, Brandon Casey, Peter Fearns, John Hedley, Wojciech Klonowski, Zhong P. Lee, Merv Lynch, Mitchell Lyons, Curtis Mobley, Chris Roelfsema
Intercomparison of shallow water bathymetry, hydro-optics, and benthos mapping techniques in Australian and Caribbean coastal environments
2011, 9:396-425
Abstract | PDF (Open Access)


Chad R. Hammerschmidt, Katlin L. Bowman, Melissa D. Tabatchnick, Carl H. Lamborg
Storage bottle material and cleaning for determination of total mercury in seawater
2011, 9:426-431
Abstract | PDF (Open Access)

Nico Grüner, Christina Gebühr, Maarten Boersma, Ulrike Feudel, Karen H. Wiltshire, Jan A. Freund
Reconstructing the realized niche of phytoplankton species from environmental data: fitness versus abundance approach
2011, 9:432-442
Abstract | PDF (Open Access)

Agathe Talarmin, France Van Wambeke, Solange Duhamel, Philippe Catala, Thierry Moutin, Philippe Lebaron
Improved methodology to measure taxon-specific phosphate uptake in live and unfiltered samples
2011, 9:443-453
Abstract | PDF (Open Access)

Benni Winding Hansen, Per Dolmer, Bent Vismann
In situ method for measurements of community clearance rate on shallow water bivalve populations
2011, 9:454-459
Abstract | PDF (Open Access)

Raúl E. Castillo-Medina, Georgina Arzápalo-Castañeda, Marco A. Villanueva
Making walled-, highly autofluorescent dinoflagellate algae cells accessible and amenable for immunofluorescence and application of fluorescent probes
2011, 9:460-465
Abstract | PDF (Open Access)

Jarred E Swalwell, Francois Ribalet, E. Virginia Armbrust
SeaFlow: A novel underway flow-cytometer for continuous observations of phytoplankton in the ocean
2011, 9:466-477
Abstract | PDF (Open Access)

Sergey M. Shishlyannikov, Yulia R. Zakharova, Nadezhda A. Volokitina, Ivan S. Mikhailov, Darya P. Petrova, Yelena V. Likhoshway
A procedure for establishing an axenic culture of the diatom Synedra acus subsp. radians (Kütz.) Skabibitsch. from Lake Baikal
2011, 9:478-484
Abstract | PDF (Open Access)

Leah Johnson, Tomoko Komada
Determination of radiocarbon in marine sediment porewater dissolved organic carbon by thermal sulfate reduction
2011, 9:485-498
Abstract | PDF (Open Access)

Marshall W. Bowles, Vladimir A. Samarkin, Samantha B. Joye
Improved measurement of microbial activity in deep-sea sediments at in situ pressure and methane concentration
2011, 9:499-506
Abstract | PDF (Open Access)

Michal Tušer, Helge Balk, Tomáš Mrkvička, Jaroslava Frouzová, Martin Čech, Milan Muška, Jan Kubečka
Validation of current acoustic dead-zone estimation methods in lakes with strongly sloped bottoms
2011, 9:507-514
Abstract | PDF (Open Access)

Qingzhi Zhu, Robert C. Aller, Aleya Kaushik
Analysis of vitamin B12 in seawater and marine sediment porewater using ELISA
2011, 9:515-523
Abstract | PDF (Open Access)


Nigel E. Hussey, Demian D. Chapman, Erin Donnelly, Debra L. Abercrombie, Aaron T. Fisk
Fin-icky samples: an assessment of shark fin as a source material for stable isotope analysis
2011, 9:524-532
Abstract | PDF (Open Access)

Jingdong Mao, Xiaoyan Cao
Characterization of heterogeneities and domains in aquatic and sedimentary organic matter by 1H spin diffusion: Potential for elucidating the formation mechanisms
2011, 9:533-542
Abstract | PDF (Open Access)

Kenneth S. Johnson, James P. Barry, Luke J. Coletti, Steve E. Fitzwater, Hans W. Jannasch, Chris F. Lovera
Nitrate and oxygen flux across the sediment-water interface observed by eddy correlation measurements on the open continental shelf
2011, 9:543-553
Abstract | PDF (Open Access)


Richard L. Miller, Christopher Buonassissi, Carlos E. Del Castillo, Mathias Belz
A portable fiber optic system for measuring particle absorption using the quantified filter technique (QFT)
2011, 9:554-564
Abstract | PDF (Open Access)

Carl-Magnus Mörth, Jan Backman
Practical steps for improved estimates of calcium carbonate concentrations in deep sea sediments using coulometry
2011, 9:565-570
Abstract | PDF (Open Access)

François Cazenave, Yanwu Zhang, Erika McPhee-Shaw, James G. Bellingham, Timothy P. Stanton
High-resolution surveys of internal tidal waves in Monterey Bay, California, using an autonomous underwater vehicle
2011, 9:571-581
Abstract | PDF (Open Access)

Hongmei Chen, Aron Stubbins, Patrick G. Hatcher
A mini-electrodialysis system for desalting small volume saline samples for Fourier transform ion cyclotron resonance mass spectrometry
2011, 9:582-592
Abstract | PDF (Open Access)

Edward A. Laws, Eurico D'Sa, Puneeta Naik
Simple equations to estimate ratios of new or export production to total production from satellite-derived estimates of sea surface temperature and primary production
2011, 9:593-601
Abstract | PDF (Open Access)

Please Note

Articles are added to the Table of Contents throughout the year. The month of publication is shown as a convenient guide to locating the most recent articles. Open Access articles are freely available for download. Other articles require an institutional or individual subscription.


Volume 1, 2003
Volume 2, 2004
Volume 3, 2005
Volume 4, 2006
Volume 5, 2007
Volume 6, 2008
Volume 7, 2009
Volume 8, 2010
Volume 9, 2011
Volume 10, 2012
Volume 11, 2013
Volume 12, 2014
Intercalibration Special Issue