Table of Contents, Volume 5, 2007
January
Rüdiger Röttgers, Clivia Häse and Roland Doerffer
Determination of the particulate absorption of microalgae using a point-source integrating-cavity absorption meter: verification with a photometric technique, improvements for pigment bleaching and correction for chlorophyll fluorescence
2007, 5:1-12
Abstract | PDF 
Suilou Huang, Edward R. Sholkovitz, and Maureen H. Conte
Application of high-temperature fusion for analysis of major and trace elements in marine sediment trap samples
2007, 5:13-22
Abstract | PDF
Daniel E. Dombroski and John P. Crimaldi
The accuracy of acoustic Doppler velocimetry (ADV) measurements in turbulent boundary layer flows over a smooth bed
2007, 5:23-33
Abstract | PDF
J.K. Lotsberg, E. Marken, J.J. Stamnes, S.R. Erga, K. Aursland, and C. Olseng
Laboratory measurements of light scattering from marine particles
2007, 5:34-40
Abstract | PDF
Kerri Finlay, Beatrix E. Beisner, Allain J.D. Barnett
The use of the Laser Optical Plankton Counter to measure zooplankton size, abundance, and biomass in small freshwater lakes
2007, 5:41-49
Abstract | PDF
Robert L. Runkel
Toward a transport-based analysis of nutrient spiraling and uptake in streams
2007, 5:50-62
Abstract | PDF
Christine Laskov, Christiane Herzog, Jörg Lewandowski, Michael Hupfer
Miniaturised photometrical methods for the rapid analysis of phosphate, ammonium, ferrous iron and sulfate in pore water of freshwater sediments
2007, 5:63-71
Abstract | PDF
Thomas Reinthaler, Karel Bakker, Rinus Manuels, Jan van Ooijen and Gerhard J. Herndl
Erratum: Fully automated spectrophotometric approach to determine oxygen concentrations in seawater via continuous-flow analysis
2007, 5:72
PDF
February
Daniel C.O. Thornton, Elizabeth M. Fejes, Steven F. DiMarco, and Kristen M. Clancy
Measurement of acid polysaccharides in marine and freshwater samples using alcian blue
2007, 5:73-87
Abstract | PDF
Gregory N. Nishihara and Josef D. Ackerman
On the determination of mass transfer in a concentration boundary layer
2007, 5:88-96
Abstract | PDF | Appendix
March
O. Ben-Tzvi, A. Abelson, S. D. Gaines, M. S. Sheehy, G.L. Paradis, and M. Kiflawi
The inclusion of sub-detection limit LA-ICPMS data, in the analysis of otolith microchemistry, by use of a palindrome sequence analysis (PaSA)
2007, 5:97-105
Abstract | PDF | Appendix
April
Marnie Jo Zirbel, Charles B. Miller, and Harold P. Batchelder
Staging egg development of marine copepods with DAPI and PicoGreen®
2007, 5, 106-110
Abstract | PDF
Tom Andersen, Tuomo M. Saloranta, and Timo Tamminen
A statistical procedure for unsupervised classification of nutrient limitation bioassay experiments with natural phytoplankton communities
2007, 5:111-118
Abstract | PDF | Updates | Appendices
May
Alistair R. Grinham, Tim J. B. Carruthers, Paul L. Fisher, James W. Udy, and William C. Dennison
Accurately measuring the abundance of benthic microalgae in spatially variable habitats
2007, 5, 119-125
Abstract | PDF
Rüdiger Röttgers and Roland Doerffer
Measurements of optical absorption by chromophoric dissolved organic matter using a point-source integrating-cavity absorption meter
2007, 5, 126-135
Abstract | PDF
Melanie Beck, Olaf Dellwig, Kerstin Kolditz, Holger Freund, Gerd Liebezeit, Bernhard Schnetger, and Hans-Jürgen Brumsack
In situ pore water sampling in deep intertidal flat sediments
2007, 5, 136-144
Abstract | PDF
Matthew C. Van de Bogert, Stephen R. Carpenter, Jonathan J. Cole, and Michael L. Pace
Assessing pelagic and benthic metabolism using free water measurements
2007, 5:145-155
Abstract | PDF
June
Jeffrey W. Gartner and Neil K. Ganju
Correcting acoustic Doppler current profiler discharge measurement bias from moving-bed conditions without global positioning during the 2004 Glen Canyon Dam controlled flood on the Colorado River
2007, 5:156-162
Abstract | PDF
Barbara A. Costas, George McManus, Mary Doherty, Laura A. Katz
Use of species-specific primers and PCR to measure the distributions of planktonic ciliates in coastal waters
2007, 5:163-173
Abstract | PDF
Steven R. Beaupré, Ellen R. M. Druffel, Sheila Griffin
A low-blank photochemical extraction system for concentration and isotopic analyses of marine dissolved organic carbon
2007, 5:174-184
Abstract | PDF
Andreas Brand, Beat Müller, Alfred Wüest, Christian Dinkel, Niels Peter Revsbech, Lars Peter Nielsen, Ole Pedersen, Lars Riis Damgaard, Lars Hauer Larsen, Bernhard Wehrli
Microsensor for in-situ flow measurements in benthic boundary layers at sub-millimeter resolution with extremely slow flow
2007, 5:185-191
Abstract | PDF
Bart Veuger, Jack J. Middelburg, Henricus T.S. Boschker and Marco Houtekamer
Update of “Analysis of 15N incorporation into D-alanine: A new method for tracing nitrogen uptake by bacteria” (Veuger et al. 2005, Limnol. Oceanogr.: Methods 3: 230-240)
2007, 5:192-194
Introduction | PDF | Original Article
Robert J. Olson and Heidi M. Sosik
A submersible imaging-in-flow instrument to analyze nano- and microplankton: Imaging FlowCytobot
2007, 5:195-203
Abstract | PDF
Heidi M. Sosik and Robert J. Olson
Automated taxonomic classification of phytoplankton sampled with imaging in-flow cytometry
2007, 5:204-216
Abstract | PDF | Appendix
July
Lisa Almesjö and Carl Rolff
Automated measurements of filamentous cyanobacteria by digital image analysis
2007, 5:217-224
Abstract | PDF
J. Martín Hernández-Ayon, Alberto Zirino, A. G. Dickson, Tania Camiro-Vargas and E. Valenzuela
Estimating the contribution of organic bases from microalgae to the titration alkalinity in coastal seawaters
2007, 5:225-232
Abstract | PDF
Stephen K. Hamilton and Nathaniel E. Ostrom
Measurement of the stable isotope ratio of dissolved N2 in 15N tracer experiments
2007, 5:233-240
Abstract | PDF
September
C.A. Strasser, S.R. Thorrold, V.R. Starczak, L.S. Mullineaux
Laser ablation ICP-MS analysis of larval shell in softshell clams (Mya arenaria) poses challenges for natural tag studies
2007, 5: 241-249
Abstract | PDF
Philipp Fischer, Arnd Weber, Georg Heine, Harald Weber
Habitat structure and fish: assessing the role of habitat complexity for fish using a small, semi-portable, 3D underwater observatory
2007, 5: 250-262
Abstract | PDF
Sharmishtha Dattagupta, Guy Telesnicki, Kathryn Luley, Benjamin Predmore, Michael McGinley, Charles R. Fisher
Submersible operated peepers for collecting pore water from deep-sea sediments
2007, 5: 263-268
Abstract | PDF
Jean Nouguier, Behzad Mostajir, Emilie Le Floc’h, Francesca Vidussi
An automatically operated system for simulating global change temperature and ultraviolet B radiation increases: application to the study of aquatic ecosystem responses in mesocosm experiments
2007, 5: 269-279
Abstract | PDF
C.M. Solomon, J.A. Alexander and P.M. Glibert
Measuring urease activity in environmental samples
2007, 5:280-288
Abstract | PDF
Bernd Spänhoff
Vacuum pressure prewetting - A simple and rapid method to water saturate wood for experimental purposes
2007, 5:289-292
Abstract | PDF
Mareva Chanson and Frank J. Millero
Effect of filtration on the total alkalinity of open-ocean seawater
2007, 5:293-295
Abstract | PDF
October
Christopher L. Osburn and Gilles St-Jean
The use of wet chemical oxidation with high-amplification isotope ratio mass spectrometry (WCO-IRMS) to measure stable isotope values of dissolved organic carbon in seawater.
2007, 5:296-308
Abstract | PDF
Heinz Filthuth, Gabriele Eickert, Paul Faerber, Henk M. Jonkers, Lubos Polerecky, Dirk de Beer
A novel radioactivity microsensor for high spatial resolution measurements of beta radiation
2007, 5:309-316
Abstract | PDF
Nicole L. Jones, Stephen G Monismith
Measuring short-period wind waves in a tidally forced environment with a subsurface pressure gauge
2007, 5:317-327
Abstract | PDF
Suzanne C. Dufour, Gaston Desrosiers, Bernard Long, Patrick Lajeunesse, Marie Gagnoud, Jacques Labrie, Philippe Archambault, Georges Stora
Update: A new method for three-dimensional visualisation and quantification of biogenic structures in aquatic sediments using axial tomodensitometry
Original Publication 2005, 3:372-380
Original Article PDF | Update
Björn Rost, Sven A. Kranz, Klaus-Uwe Richter, Philippe D. Tortell
Isotope disequilibrium and mass spectrometric studies of inorganic carbon acquisition by phytoplankton
2007, 5:328-337
Abstract | PDF
Travis Ingram, Blake Matthews, Chris Harrod, Tom Stephens, Jonathan Grey, Russell Markel, Asit Mazumder
Lipid extraction has little effect on the d15N of aquatic consumers
2007, 5:338-343
Abstract | PDF
Michael Stachowitsch, Bettina Riedel, Martin Zuschin, and Rudolf Machan
Oxygen depletion and benthic mortalities: the first in situ experimental approach to documenting an elusive phenomenon
2007, 5:344-352
Abstract | PDF
Lisa R. Moore, Allison Coe, Erik R. Zinser, Mak A. Saito, Matthew B. Sullivan, Debbie Lindell, Katya Frois-Moniz, John Waterbury, Sallie W. Chisholm
Culturing the marine cyanobacterium Prochlorococcus
2007, 5:353-362
Abstract | PDF
Carlos R. Mendes, Paulo Cartaxana, and Vanda Brotas
HPLC determination of phytoplankton and microphytobenthos pigments: comparing resolution and sensitivity of a C18 and a C8 method
2007, 5:363-370
Abstract | PDF
Saad Chidami, Guillaume Guénard and Marc Amyot
Underwater infrared video system for behavioural studies in lakes
2007, 5:371-378
Abstract | PDF
November
Kimberley F. Keats, Richard B. Rivkin, Michelle S. Hale, and David C. Schneider
Effects of long-term sample storage on the detection of bacterial cells using fluorescence in situ hybridization
2007, 5:379-383
Abstract | PDF
Kadija Oubelkheir, Herve Claustre, Annick Bricaud, Marcel Babin
Partitioning total spectral absorption in phytoplankton and colored detrital material contributions
2007, 5:384-395
Abstract | PDF
Lee Karp-Boss, Laura Azavedo and Emmanuel Boss
LISST-100 measurements of phytoplankton size distribution: evaluation of the effects of cell shape
2007, 5:396-406
Abstract | PDF
Sébastien Lamontagne and Peter G. Cook
Estimation of hyporheic water residence time in situ using 222Rn disequilibrium
2007, 5:407-416
Abstract | PDF
Zackary I. Johnson and Tamara L. Sheldon
A high-throughput method to measure photosynthesis-irradiance curves of phytoplankton
2007, 5:417-424
Abstract | PDF
Carine Chaduteau, Elise Fourré, Philippe Jean-Baptiste, Arnaud Dapoigny, Dominique Baumier & Jean-Luc Charlou
A new method for quantitative analysis of helium isotopes in sediment pore-waters
2007, 5:425-432
Abstract | PDF
December
Kaarina Lukkari, Helinä Hartikainen, and Mirja Leivuori
Fractionation of sediment phosphorus revisited: I Fractionation steps and their biogeochemical basis
2007, 5:433-444
Abstract | PDF
Kaarina Lukkari, Mirja Leivuori, and Helinä Hartikainen
Fractionation of sediment phosphorus revisited: II Changes in phosphorus fractions during sampling and storing in the presence or absence of oxygen
2007, 5:445-456
Abstract | PDF
Tinglu Zhang and Frank Fell
An empirical algorithm for determining the diffuse attenuation coefficient Kd in clear and turbid waters from spectral remote sensing reflectance
2007, 5:457-462
Abstract | PDF
Brian M. Gaas and James W. Ammerman
Automated high resolution ectoenzyme measurements: instrument development and deployment in three trophic regimes
2007, 5:463-473
Abstract | PDF
Andreas Rueckert, Susanna A. Wood, S. Craig Cary
Development and field assessment of a quantitative PCR for the detection and enumeration of the noxious bloom-former Anabaena planktonica
2007, 5:474-483
Abstract | PDF
Andrew J. Tanentzap, David P. Hamilton, and Norman D. Yan
Calibrating the Dynamic Reservoir Simulation Model (DYRESM) and filling required data gaps for 1-dimensional thermal profile predictions in a boreal lake
2007, 5:484-494
Abstract | PDF
Ingrid Hillmer, Jörg Imberger
Estimating in situ phytoplankton growth rates with a Lagrangian sampling strategy
2007, 5:495-509
Abstract | PDF