Table of Contents, Volume 3, 2005


Lone Liboriussen, Frank Landkildehus, Mariana Meerhoff, Mette E. Bramm, Morten Søndergaard, Kirsten Christoffersen, Katherine Richardson, Martin Søndergaard, Torben L. Lauridsen,Erik Jeppesen
Global warming: Design of a flow-through shallow lake mesocosm climate experiment
2005, 3:1-9
Abstract | PDF (Open Access)

Carlos Rocha, Stefan Forster, Erika Koning, Eric Epping
High-resolution permeability determination and two-dimensional pore water flow in sandy sediment
2005, 3:10-23
Abstract | PDF (Open Access)

Philippe D Tortell
Dissolved gas measurements in oceanic waters made by membrane inlet mass spectrometry
2005, 3:24-37
Abstract | PDF (Open Access)

Mark Hatay, Neilan M. Kuntz, and Forest Rohwer
SPIDERS: A syringe pump system for in situ underwater dosing of benthic organisms
2005, 3:38-45
Abstract | PDF (Open Access)


Gitai Yahel, Dominique Marie, and Amatzia Genin
InEx - a direct in situ method to measure filtration rates, nutrition and metabolism of active suspension feeders
2005, 3:46-58
Abstract | PDF (Open Access)

Cabell S Davis, Fredrik T Thwaites, Scott M Gallager, Qiao Hu
A three-axis fast-tow digital Video Plankton Recorder for rapid surveys of plankton taxa and hydrography
2005, 3:59-74
Abstract | PDF (Open Access)

Lubos Polerecky, Ulrich Franke, Ursula Werner, Bjorn Grunwald, Dirk de Beer
High spatial resolution measurement of oxygen consumption rates in permeable sediments
2005, 3:75-85
Abstract | PDF (Open Access)

Natalia V. Ivanikova, R. Michael L. McKay, George S. Bullerjahn
Construction and characterization of a cyanobacterial bioreporter capable of assessing nitrate assimilatory capacity in freshwaters
2005, 3:86-93
Abstract | PDF (Open Access)

T. Frede Thingstad and R. Fauzi C. Mantoura
Titrating excess nitrogen content of phosphorous-deficient eastern Mediterranean surface water using alkaline phosphatase activity as a bio-indicator
2005, 3:94-100
Abstract | PDF (Open Access)

Nanna Buesing, Jürgen Marxsen
Theoretical and empirical conversion factors for determining bacterial production in freshwater sediments via leucine incorporation
2005, 3:101-107
Abstract | PDF | Erratum (Open Access)

Yannick Huot, Catherine A Brown, John J Cullen
New algorithms for MODIS sun-induced chlorophyll fluorescence and a comparison with present data products
2005, 3:108-130
Abstract | PDF | Appendix 1  2 (Open Access)

Donald O. Rosenberry
Integrating seepage heterogeneity with the use of ganged seepage meters
2005, 3:131-142
Abstract | PDF (Open Access)

Elena Gorokhova
Effects of preservation and storage of microcrustaceans in RNAlater on RNA and DNA degradation
2005, 3:143-148
Abstract | PDF (Open Access)


Stephen K. Hamilton, Suzanne J. Sippel, Stuart E. Bunn
Separation of algae from detritus for stable isotope or ecological stoichiometry studies using density fractionation in colloidal silica
2005, 3:149-157
Abstract | PDF (Open Access)

Roberto Bertoni and Esteban Balseiro
Mixing layer running incubator (MIRI): an instrument for incubating samples while moving vertically in the mixing layer
2005, 3:158-163
Abstract | PDF | Appendix 1 (Open Access)

Toshihiro Miyajima, Yasuaki Tanaka, Isao Koike
Determining 15N enrichment of dissolved organic nitrogen in environmental waters by gas chromatography/negative-ion chemical ionization mass spectrometry
2005, 3:164-173
Abstract | PDF (Open Access)

Robert A. Payn, Jackson R. Webster, Patrick J. Mulholland, H. Maurice Valett, and Walter K. Dodds
Estimation of stream nutrient uptake from nutrient addition experiments
2005, 3:174-182
Abstract | PDF (Open Access)

Alexander T. Mustard and Thomas R. Anderson
Use of spherical and spheroidal models to calculate zooplankton biovolume from particle equivalent spherical diameter as measured by an optical plankton counter
2005, 3:183-189
Abstract | PDF (Open Access)

Brett Branco, Thomas Torgersen, John R. Bean, Gary Grenier, and Dennis Arbige
A new water column profiler for shallow aquatic systems
2005, 3:190-202
Abstract | PDF (Open Access)


Natalie J. Frost, Michael T. Burrows, Mark P. Johnson, Mick E. Hanley and Stephen J. Hawkins
Measuring surface complexity in ecological studies
2005, 3:203-210
Abstract | PDF (Open Access)

Craig E. Nelson, Craig A. Carlson
A non-radioactive assay of bacterial productivity optimized for oligotrophic pelagic environments
2005, 3:211-220
Abstract | PDF (Open Access)

Nanna Buesing, Jürgen Marxsen
Erratum: Theoretical and empirical conversion factors for determining bacterial production in freshwater sediments via leucine incorporation
2005, 3:221

Robert O. Hall, Jennifer L. Tank
Correcting whole-stream estimates of metabolism for groundwater input
2005, 2:222-229
Abstract | PDF (Open Access)


Bart Veuger, Jack J. Middelburg, Henricus T.S. Boschker and Marco Houtekamer
Analysis of 15N incorporation into D-alanine: a new method for tracing nitrogen uptake by bacteria
2005, 3:230-240
Abstract | PDF (Open Access)

Mussie Okbamichael, Sergio A. Sañudo-Wilhelmy
Direct determination of vitamin B1 in seawater by solid-phase extraction and High Performance Liquid Chromatography quantification
2005, 3:241-246
Abstract | PDF (Open Access)

Christen M. Herren, Steven H.D. Haddock, Cyril Johnson, Cristina M. Orrico, Mark A. Moline, and James F. Case
A multi-platform bathyphotometer for fine-scale, coastal bioluminescence research
2005, 3:247-262
Abstract | PDF (Open Access)


Sveinn Ó. Pálmarsson, S. Geoffrey Schladow,Derek A. Fong
Salvaging velocity measurements corrupted by nearby instruments
2005, 3:263-274
Abstract | PDF (Open Access)

Thomas M. Grothues, Kenneth W. Able, Janice McDonnell, and Mitchell M. Sisak
An estuarine observatory for real-time telemetry of migrant macrofauna: Design, performance, and constraints
2005, 3:275-289
Abstract | PDF | Appendix 1 (Open Access)


Marta Revilla, Jeff Alexander, Patricia M Glibert
Urea analysis in coastal waters: Comparison of enzymatic and direct methods
2005, 3:290-299
Abstract | PDF (Open Access)

Craig L Stevens, Peter Hill, Murray J Smith, Stephane Popinet
SUCA: An Engine for Repetitive Autonomous Profiling Near the Ocean Surface
2005, 3:300-307
Abstract | PDF (Open Access)

Lauren P. O’Neill, Claudia R. Benitez-Nelson, Renée M. Styles, Eric Tappa,Robert C. Thunell
Diagenetic effects on particulate phosphorus samples collected using formalin poisoned sediment traps
2005, 3:308-317
Abstract | PDF (Open Access)


Karl Kaiser and Ronald Benner
Hydrolysis-induced racemization of amino acids
2005, 3:318-325
Abstract | PDF | Erratum (Open Access)

Kathleen A Schwehr, Peter H. Santschi, David Elmore
The dissolved organic iodine species of the isotopic ratio of 129I/127I: A novel tool for tracing terrestrial organic matter in the estuarine surface waters of Galveston Bay, Texas
2005, 3:326-337
Abstract | PDF (Open Access)

Sveinn Ó. Pálmarsson, Todd E. Steissberg, S. Geoffrey Schladow
Correcting for slow platform movement in deep-water ADCP measurements
2005, 3:338-348
Abstract | PDF (Open Access)

M. E. Torres, A. C. Mix, W. D. Rugh
Precise δ13C analysis of dissolved inorganic carbon in natural waters using automated headspace sampling and continuous-flow mass spectrometry.
2005, 3:349-360
Abstract | PDF (Open Access)

Jens Seeberg-Elverfeldt, Michael Schlüter, Tomas Feseker,Martin Kölling
Rhizon sampling of pore waters near the sediment/water interface of aquatic systems
2005, 3:361-371
Abstract | PDF (Open Access)

Suzanne C. Dufour, Gaston Desrosiers, Bernard Long, Patrick Lajeunesse, Marie Gagnoud, Jacques Labrie, Philippe Archambault, Georges Stora
A new method for three-dimensional visualisation and quantification of biogenic structures in aquatic sediments using axial tomodensitometry
2005, 3:372-380
Abstract | PDF | Updates | Appendix 1 (Open Access)


Kathryn J. Coyne, Sara M. Handy, Elif Demir, Edward B. Whereat, David A. Hutchins, Kevin J. Portune, Martina A. Doblin, S. Craig Cary
Improved quantitative real-time PCR assays for enumeration of harmful algal species in field samples using an exogenous DNA reference standard
2005, 3:381-391
Abstract | PDF (Open Access)

Clive R. McMahon, Emmanuelle Autret, Jonathan D. R. Houghton, Phil Lovell, Andrew E. Myers and Graeme C. Hays
Animal borne sensors successfully capture the real-time thermal properties of ocean basins
2005, 3:392-398
Abstract | PDF (Open Access)

Jochen Vandekerkhove, Steven Declerck, Luc Brendonck, José Maria Conde-Porcuna, Erik Jeppesen, Liselotte Sander Johansson, Luc De Meester
Uncovering hidden species: hatching diapausing eggs for the analysis of cladoceran species richness
2005, 3:399-407
Abstract | PDF (Open Access)

John D. Kessler, William S. Reeburgh
Preparation of natural methane samples for stable isotope and radiocarbon analysis
2005, 3:408-418
Abstract | PDF (Open Access)


Christos Panagiotopoulos, Richard Sempere
Analytical methods for the determination of sugars in marine samples: A historical perspective and future directions
2005, 3:419-454
Abstract | PDF (Open Access)

Stewart J Fallon, Thomas P Guilderson
Extracting growth rates from the non-laminated coralline sponge Astrosclera willeyana using bomb radiocarbon
2005, 3:455-461
Abstract | PDF (Open Access)

Karine Leblanc, David A Hutchins
New applications of a biogenic silica deposition fluorophore in the study of oceanic diatoms
2005, 3:462-476
Abstract | PDF (Open Access)

Nina Reuss, Daniel J Conley
Effects of storage of sediment samples for pigment analyses
2005, 3:477-487
Abstract | PDF (Open Access)


Jeffrey C Drazen, James P Barry, Larry E Bird
Development of a hyperbaric trap-respirometer for the capture and maintenance of live deep-sea organisms
2005, 3:488-498
Abstract | PDF (Open Access)

Charles H. Mazel
Underwater fluorescence photography in the presence of ambient light
2005, 3:499-510
Abstract | PDF (Open Access)


Joanne M. Oakes, Andrew T. Revill, Rod M. Connolly, and Susan I. Blackburn
Measuring carbon isotope ratios of microphytobenthos using compound-specific stable isotope analysis of phytol
2005, 3:511-519
Abstract | PDF (Open Access)

Michael L. Peterson, Stuart G. Wakeham, Cindy Lee, Meaghan A. Askea, and Juan Carlos Miquel
Novel techniques for collection of sinking particles in the ocean and determining their settling rates
2005, 3:520-532
Abstract | PDF (Open Access)

Andrew Bissett, John A. E. Gibson, Simon N. Jarman, Kerrie M. Swadling and Louise Cromer
Isolation, amplification and identification of ancient copepod DNA from lake sediments.
2005, 3:533-542
Abstract | PDF (Open Access)

Please Note

Articles are added to the Table of Contents throughout the year. The month of publication is shown as a convenient guide to locating the most recent articles. Open Access articles are freely available for download. Other articles require an institutional or individual subscription.


Volume 1, 2003
Volume 2, 2004
Volume 3, 2005
Volume 4, 2006
Volume 5, 2007
Volume 6, 2008
Volume 7, 2009
Volume 8, 2010
Volume 9, 2011
Volume 10, 2012
Volume 11, 2013
Volume 12, 2014
Intercalibration Special Issue